Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4709KEGG: ypi:YpsIP31758_3075 putative lipoprotein. (144 aa)    
Predicted Functional Partners:
Daci_1297
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM.
  
  
 0.897
Daci_4044
PFAM: flavodoxin/nitric oxide synthase; KEGG: vei:Veis_4981 flavodoxin/nitric oxide synthase.
   
  
 0.709
Daci_0370
KEGG: ajs:Ajs_0255 hypothetical protein.
   
  
 0.681
Daci_1805
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aav:Aave_3867 transport-associated.
   
  
 0.681
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.617
Daci_0834
PFAM: Peptidoglycan-binding LysM; KEGG: aav:Aave_4687 peptidoglycan-binding LysM.
   
    0.569
Daci_3330
PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: ajs:Ajs_1688 NAD(P)H dehydrogenase (quinone).
   
  
 0.569
Daci_0138
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpn:KPN_03087 outer membrane porin, receptor for ferric enterobactin and colicins B and D.
  
     0.467
Daci_1142
PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase.
  
     0.422
Daci_3991
PFAM: protein of unknown function DUF883 ElaB; KEGG: ajs:Ajs_2135 protein of unknown function DUF883, ElaB.
   
  
 0.410
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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