STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4728KEGG: pol:Bpro_1783 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Daci_4726
KEGG: aav:Aave_3287 hypothetical protein.
 
     0.820
Daci_0829
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
  
     0.761
Daci_5490
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.751
Daci_1270
PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase.
 
    0.704
Daci_5347
KEGG: aav:Aave_1882 hypothetical protein.
 
     0.689
Daci_5080
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: vei:Veis_0403 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.684
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.661
Daci_3591
ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.653
Daci_4910
KEGG: aav:Aave_2634 putative inner membrane transmembrane protein.
 
     0.647
lapB
Tetratricopeptide domain protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
       0.622
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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