STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4734PFAM: Na+/H+ antiporter subunit; KEGG: ajs:Ajs_2479 Na+/H+ antiporter subunit. (127 aa)    
Predicted Functional Partners:
Daci_4729
NADH dehydrogenase (quinone); PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: ajs:Ajs_2474 NADH dehydrogenase (quinone).
 
 
 0.999
Daci_4731
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ajs:Ajs_2476 NADH/ubiquinone/plastoquinone (complex I).
 
 
 0.999
Daci_4732
PFAM: cation antiporter; KEGG: aav:Aave_3292 monovalent cation/proton antiporter, MnhE/PhaE subunit.
 
 
 0.999
Daci_4733
PFAM: multiple resistance and pH regulation protein F; KEGG: vei:Veis_3905 multiple resistance and pH regulation protein F.
 
 
 0.999
Daci_4730
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ajs:Ajs_2475 NADH-ubiquinone oxidoreductase, chain 4L.
 
 
 0.998
Daci_5169
KEGG: ajs:Ajs_0968 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.880
Daci_4728
KEGG: pol:Bpro_1783 hypothetical protein.
       0.499
Daci_4735
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2487 conserved hypothetical protein 730.
       0.440
lapB
Tetratricopeptide domain protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
       0.420
nuoD
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
   0.419
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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