STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4736PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2488 major facilitator superfamily MFS_1. (393 aa)    
Predicted Functional Partners:
Daci_4737
PFAM: protein of unknown function DUF195; KEGG: ajs:Ajs_2489 protein of unknown function DUF195.
       0.816
Daci_2381
KEGG: vei:Veis_1656 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
  
     0.761
Daci_4952
KEGG: aav:Aave_2989 hypothetical protein.
  
     0.760
Daci_0875
PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family.
 
   
 0.733
Daci_5459
KEGG: aav:Aave_3642 hypothetical protein.
  
     0.716
Daci_3389
KEGG: aav:Aave_3411 DNA-directed DNA polymerase.
  
     0.672
Daci_1657
PFAM: protein of unknown function DUF490; KEGG: aav:Aave_3956 protein of unknown function DUF490.
  
     0.671
Daci_2264
KEGG: ajs:Ajs_1151 hypothetical protein.
  
     0.664
Daci_5932
TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ajs:Ajs_0616 HAD-superfamily hydrolase, subfamily IIB.
 
    0.660
Daci_2455
KEGG: ajs:Ajs_2784 hypothetical protein.
  
     0.642
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.