Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_4742TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: vei:Veis_2554 phasin family protein. (182 aa)    
Predicted Functional Partners:
Daci_3981
KEGG: ajs:Ajs_2126 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
     0.759
Daci_4967
KEGG: ajs:Ajs_1199 membrane protein-like protein.
  
     0.728
Daci_4894
PFAM: porin Gram-negative type; KEGG: bur:Bcep18194_B0482 outer membrane protein (porin).
  
     0.724
Daci_4910
KEGG: aav:Aave_2634 putative inner membrane transmembrane protein.
  
     0.723
Daci_0514
KEGG: aav:Aave_4527 putative proline rich signal peptide protein.
  
     0.716
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.701
Daci_5627
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.694
Daci_2239
PFAM: Rieske [2Fe-2S] domain protein; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain protein.
  
     0.689
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
     0.682
Daci_3680
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.677
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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