STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4774PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_2741 17 kDa surface antigen. (213 aa)    
Predicted Functional Partners:
Daci_5266
PFAM: Anti sigma-E protein RseA family protein; KEGG: ajs:Ajs_3273 anti sigma-E protein, RseA.
   
    0.658
ppnP
Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
       0.589
Daci_4998
KEGG: ajs:Ajs_1193 hypothetical protein.
  
  
 0.577
Daci_4771
PFAM: Sporulation domain protein; KEGG: ajs:Ajs_2738 sporulation domain protein.
 
     0.575
Daci_4773
PFAM: arsenate reductase and related; KEGG: ajs:Ajs_2740 arsenate reductase and related; Belongs to the ArsC family.
     
 0.463
Daci_0899
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2324 methyltransferase type 11.
  
     0.450
Daci_2918
PFAM: Mammalian cell entry related domain protein; KEGG: aav:Aave_1818 mammalian cell entry related domain protein.
  
     0.446
Daci_2563
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vei:Veis_1575 HAD-superfamily hydrolase, subfamily IA, variant 3.
  
     0.445
Daci_2781
KEGG: rfr:Rfer_1936 hypothetical protein.
  
     0.433
Daci_4770
PFAM: Colicin V production protein; KEGG: aav:Aave_1862 colicin V production protein.
 
     0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.