Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4803KEGG: bbr:BB3159 hypothetical protein. (128 aa)    
Predicted Functional Partners:
Daci_4802
KEGG: pol:Bpro_1534 hypothetical protein.
 
 
 0.994
Daci_1536
Transcriptional regulator, XRE family; KEGG: plu:plu2131 putative transcriptional regulator.
 
   
 0.572
Daci_1687
TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: neu:NE1356 hypothetical protein.
 
     0.560
Daci_4804
PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_2756 alpha/beta hydrolase fold.
       0.520
Daci_4801
PFAM: extracellular solute-binding protein family 1; KEGG: bbr:BB1453 putative regulatory lipoprotein.
       0.480
Daci_1535
PFAM: protein of unknown function DUF1044; KEGG: plu:plu2130 hypothetical protein.
  
   
 0.470
Daci_1686
Putative transcriptional regulator; TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family.
 
     0.467
Daci_1245
TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: pna:Pnap_0084 protein of unknown function DUF891.
 
     0.453
Daci_1211
Putative plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; KEGG: dno:DNO_0272 virulence-associated protein VapI.
 
   
 0.428
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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