Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4804PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_2756 alpha/beta hydrolase fold. (325 aa)    
Predicted Functional Partners:
Daci_0427
KEGG: pna:Pnap_0262 hypothetical protein.
  
     0.669
Daci_1134
PFAM: acyl-coA-binding protein ACBP; KEGG: ajs:Ajs_0455 acyl-coA-binding protein, ACBP.
  
 
  0.568
Daci_1124
KEGG: ajs:Ajs_0447 hypothetical protein.
  
  
 0.550
Daci_4803
KEGG: bbr:BB3159 hypothetical protein.
       0.520
Daci_4802
KEGG: pol:Bpro_1534 hypothetical protein.
       0.507
Daci_5374
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pna:Pnap_3224 acyl-CoA dehydrogenase domain protein.
  
  0.434
apaH
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.427
cobD-2
Cobalamin biosynthesis protein CbiB; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
     0.426
Daci_0829
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
  
     0.413
Daci_5375
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_3440 acyl-CoA dehydrogenase domain protein.
  
  0.412
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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