STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4816PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0998 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)    
Predicted Functional Partners:
Daci_4817
KEGG: rme:Rmet_5432 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.761
Daci_4815
PFAM: regulatory protein LuxR; KEGG: rfr:Rfer_0996 ATP-dependent transcriptional regulator, MalT-like, LuxR family.
 
   
 0.577
Daci_1529
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3623 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.562
Daci_2388
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase/isomerase.
   
 0.562
Daci_1340
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_0595 acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.551
Daci_1394
KEGG: ajs:Ajs_3738 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.551
Daci_3314
KEGG: ajs:Ajs_1685 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.551
Daci_5988
KEGG: ajs:Ajs_3776 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.551
Daci_1762
KEGG: rfr:Rfer_1849 (acyl-carrier protein) S-malonyltransferase.
 
 
 0.495
Daci_4825
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_5435 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
 
   0.493
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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