Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4823KEGG: rfr:Rfer_1005 extracellular ligand-binding receptor. (437 aa)    
Predicted Functional Partners:
Daci_4821
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1004 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.928
Daci_4820
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1003 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.920
Daci_4818
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1001 ABC transporter related.
 
  
 0.774
Daci_4819
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1002 ABC transporter related.
 
  
 0.733
Daci_0574
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3953 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.699
Daci_2439
KEGG: aav:Aave_2213 hypothetical protein.
  
     0.658
Daci_4824
PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_1006 AMP-dependent synthetase and ligase.
       0.658
Daci_4822
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_3255 enoyl-CoA hydratase/isomerase.
       0.645
Daci_4825
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_5435 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.636
Daci_4826
PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5438 AMP-dependent synthetase and ligase.
       0.627
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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