STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4825PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_5435 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (360 aa)    
Predicted Functional Partners:
Daci_0692
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
  
 
0.906
Daci_4824
PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_1006 AMP-dependent synthetase and ligase.
 
     0.806
Daci_4826
PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5438 AMP-dependent synthetase and ligase.
       0.764
Daci_4827
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rfr:Rfer_0994 acyl-CoA dehydrogenase-like.
 
 
  0.762
Daci_4823
KEGG: rfr:Rfer_1005 extracellular ligand-binding receptor.
       0.636
Daci_4822
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_3255 enoyl-CoA hydratase/isomerase.
    
  0.541
Daci_2470
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.537
Daci_4828
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0595 oxidoreductase, short chain dehydrogenase/reductase family protein.
   
   0.511
Daci_4816
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0998 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
   0.493
Daci_0195
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; PFAM: MaoC domain protein dehydratase; KEGG: ajs:Ajs_0121 MaoC domain protein dehydratase.
 
 
 0.473
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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