Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_4834PFAM: protein of unknown function DUF323; KEGG: aav:Aave_3090 protein of unknown function DUF323. (430 aa)    
Predicted Functional Partners:
Daci_4835
KEGG: aav:Aave_3091 putative uncharacterized conserved protein.
  
 0.997
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
  
  
 0.635
Daci_0296
PFAM: sulfatase; KEGG: aav:Aave_4466 sulfatase.
  
   0.600
Daci_3115
Cerebroside-sulfatase; PFAM: sulfatase; KEGG: bbr:BB1025 probable sulfatase.
  
   0.600
Daci_5404
PFAM: sulfatase; KEGG: vei:Veis_2294 sulfatase.
  
   0.600
Daci_3845
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: aav:Aave_1472 OmpA/MotB domain protein.
  
  
 0.555
Daci_4833
Hypothetical protein.
       0.547
Daci_0661
PFAM: glutamine amidotransferase class-II; KEGG: aav:Aave_0403 glutamine amidotransferase, class-II.
  
  
 0.519
Daci_3847
KEGG: aav:Aave_1474 hypothetical protein.
  
  
 0.496
Daci_4749
KEGG: nmu:Nmul_A1825 L-lysine 6-monooxygenase (NADPH).
  
  
 0.482
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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