Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4835KEGG: aav:Aave_3091 putative uncharacterized conserved protein. (412 aa)    
Predicted Functional Partners:
Daci_4834
PFAM: protein of unknown function DUF323; KEGG: aav:Aave_3090 protein of unknown function DUF323.
  
 0.997
hutH
KEGG: aav:Aave_2965 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
     
  0.900
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
     
  0.900
Daci_3969
KEGG: aav:Aave_2831 transglycosylase-associated protein.
   
    0.745
Daci_0661
PFAM: glutamine amidotransferase class-II; KEGG: aav:Aave_0403 glutamine amidotransferase, class-II.
  
  
 0.688
Daci_4833
Hypothetical protein.
       0.547
Daci_4346
KEGG: nar:Saro_3185 transglycosylase-associated protein.
   
    0.528
Daci_5107
PFAM: protein of unknown function DUF1330; KEGG: aav:Aave_1325 protein of unknown function DUF1330.
   
    0.507
Daci_2152
PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: vei:Veis_1338 ornithine cyclodeaminase/mu-crystallin.
   
    0.481
Daci_4836
PFAM: OmpW family protein; OmpF family protein; KEGG: ajs:Ajs_2289 OmpW family protein.
       0.461
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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