Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4839TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin. (98 aa)    
Predicted Functional Partners:
Daci_4838
TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: rfr:Rfer_1750 hypothetical protein.
  
 
 0.980
Daci_2435
PFAM: plasmid stabilization system; KEGG: xfa:XF2032 plasmid stabilization protein.
   
   0.592
Daci_5159
PFAM: plasmid stabilization system; KEGG: mca:MCA2653 hypothetical protein.
   
   0.592
Daci_5833
PFAM: plasmid stabilization system; KEGG: bam:Bamb_6594 plasmid stabilization system.
   
   0.592
Daci_4840
Hypothetical protein.
       0.442
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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