Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4847KEGG: pna:Pnap_3738 hypothetical protein. (587 aa)    
Predicted Functional Partners:
Daci_4848
PFAM: zinc finger SWIM domain protein; KEGG: pna:Pnap_3737 zinc finger, SWIM domain protein.
     0.954
Daci_4846
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: pna:Pnap_3739 ATPase associated with various cellular activities, AAA_5.
 
     0.904
Daci_4844
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: pna:Pnap_3742 VWA containing CoxE family protein.
 
     0.891
Daci_4845
KEGG: pna:Pnap_3740 hypothetical protein.
 
   
 0.891
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
    
 
 0.685
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
   0.660
Daci_1623
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: eba:ebA803 putative helicase.
    
  0.640
Daci_3227
KEGG: mms:mma_2189 hypothetical protein.
    
  0.640
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.595
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
  0.587
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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