Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4848PFAM: zinc finger SWIM domain protein; KEGG: pna:Pnap_3737 zinc finger, SWIM domain protein. (481 aa)    
Predicted Functional Partners:
Daci_4847
KEGG: pna:Pnap_3738 hypothetical protein.
     0.954
Daci_4846
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: pna:Pnap_3739 ATPase associated with various cellular activities, AAA_5.
 
     0.903
Daci_4844
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: pna:Pnap_3742 VWA containing CoxE family protein.
 
     0.891
Daci_4845
KEGG: pna:Pnap_3740 hypothetical protein.
 
     0.891
Daci_5761
PFAM: conserved hypothetical protein; KEGG: pfl:PFL_5821 hypothetical protein.
  
     0.543
kptA
Phosphate acetyltransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
     0.542
Daci_5253
KEGG: pol:Bpro_3938 hypothetical protein.
 
     0.481
Daci_5762
PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfl:PFL_4115 ADP-ribosylglycohydrolase family protein.
 
     0.480
Daci_0161
PFAM: zinc finger SWIM domain protein; KEGG: hch:HCH_03960 protein containing SWIM zinc finger domain.
 
   
 0.478
Daci_0767
KEGG: mca:MCA1631 hypothetical protein.
  
     0.468
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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