Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4894PFAM: porin Gram-negative type; KEGG: bur:Bcep18194_B0482 outer membrane protein (porin). (361 aa)    
Predicted Functional Partners:
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
     0.728
Daci_4742
TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: vei:Veis_2554 phasin family protein.
  
     0.724
Daci_4910
KEGG: aav:Aave_2634 putative inner membrane transmembrane protein.
  
     0.690
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.683
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
   
 0.653
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.645
Daci_0356
TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: vei:Veis_1608 putative rod shape-determining MreD transmembrane protein.
  
     0.637
Daci_0514
KEGG: aav:Aave_4527 putative proline rich signal peptide protein.
  
     0.632
Daci_4892
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_1075 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
       0.615
Daci_4893
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_1074 (2Fe-2S)-binding domain protein.
       0.615
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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