STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4894PFAM: porin Gram-negative type; KEGG: bur:Bcep18194_B0482 outer membrane protein (porin). (361 aa)    
Predicted Functional Partners:
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
     0.728
Daci_4742
TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: vei:Veis_2554 phasin family protein.
  
     0.724
Daci_4910
KEGG: aav:Aave_2634 putative inner membrane transmembrane protein.
  
     0.690
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.683
Daci_4522
PFAM: porin Gram-negative type; KEGG: bte:BTH_II0333 outer membrane porin, putative.
  
  
 
0.674
Daci_5627
KEGG: vei:Veis_4644 porin, gram-negative type.
  
  
 
0.673
Daci_2933
PFAM: porin Gram-negative type; KEGG: rso:RSc1236 probable outer membrane porin lipoprotein transmembrane.
  
  
 
0.670
Daci_3680
KEGG: vei:Veis_4644 porin, gram-negative type.
  
  
 
0.670
Daci_2314
PFAM: porin Gram-negative type; KEGG: rso:RSc2760 putative porin signal peptide protein.
  
  
 
0.669
Daci_0904
PFAM: porin Gram-negative type; KEGG: pol:Bpro_4315 putative transmembrane outer membrane porin signal peptide protein.
  
  
 
0.667
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.