STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4909PFAM: ribosomal protein L31; KEGG: ajs:Ajs_2363 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (81 aa)    
Predicted Functional Partners:
rpmB
PFAM: ribosomal protein L28; KEGG: ajs:Ajs_3384 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.993
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.990
rpsP
PFAM: ribosomal protein S16; KEGG: ajs:Ajs_3355 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.990
rpmA
PFAM: ribosomal protein L27; KEGG: aav:Aave_3674 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.990
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.990
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.990
rpmJ
PFAM: ribosomal protein L36; KEGG: pfl:PFL_3806 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.989
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.989
rpmI
PFAM: ribosomal protein L35; KEGG: aav:Aave_2857 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.989
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aav:Aave_1181 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.989
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.