Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4949D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase. (423 aa)    
Predicted Functional Partners:
Daci_4443
KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.911
Daci_4795
KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.911
Daci_5769
PFAM: aminotransferase class I and II; KEGG: pst:PSPTO_2925 aspartate aminotransferase.
    
 0.904
Daci_2171
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A3682 aspartate transaminase.
     
 0.903
Daci_4002
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_2151 aspartate transaminase.
     
 0.903
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Orn/Lys/Arg decarboxylase major region; aminotransferase class I and II; KEGG: gox:GOX1171 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.900
Daci_2805
PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3179 aminotransferase, class I and II.
   
 
 0.900
hisC-2
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: aav:Aave_1031 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.900
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
  
  
 0.674
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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