STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4954PFAM: Lytic transglycosylase catalytic; KEGG: aav:Aave_2991 lytic transglycosylase, catalytic. (303 aa)    
Predicted Functional Partners:
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
 
   0.731
Daci_4910
KEGG: aav:Aave_2634 putative inner membrane transmembrane protein.
 
    0.712
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.692
Daci_2423
KEGG: aav:Aave_2200 protein of unknown function DUF339.
  
     0.685
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.665
Daci_2963
PFAM: protein of unknown function DUF107; KEGG: aav:Aave_3258 protein of unknown function DUF107.
  
    0.640
Daci_4898
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic.
 
  
 0.633
Daci_1262
PFAM: Lytic transglycosylase catalytic; KEGG: aav:Aave_4203 lytic transglycosylase, catalytic.
 
   
 0.619
Daci_6049
PFAM: protein of unknown function DUF1239; KEGG: aav:Aave_4783 protein of unknown function DUF1239.
  
     0.605
Daci_1839
KEGG: ajs:Ajs_3491 hypothetical protein.
  
    0.554
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.