STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4962PFAM: Acetamidase/Formamidase; KEGG: mpt:Mpe_A3600 hypothetical protein. (491 aa)    
Predicted Functional Partners:
Daci_0226
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: mpt:Mpe_A3593 regulatory protein, putative.
 
   
 0.680
Daci_0180
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: pol:Bpro_0570 regulatory protein, putative.
 
   
 0.668
Daci_4963
Transcriptional regulator, AraC family with acetamidase/formamidase activity; PFAM: helix-turn-helix- domain containing protein AraC type; Acetamidase/Formamidase; KEGG: mpt:Mpe_A3599 transcriptional regulatory protein.
 
    
0.545
amiE
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia.
 
   
 0.537
Daci_0219
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0563 periplasmic sensor hybrid histidine kinase.
 
   
 0.518
Daci_0222
TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A3589 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.438
Daci_3444
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
  
     0.410
Daci_0218
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pol:Bpro_0562 two component transcriptional regulator, LuxR family.
  
     0.402
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.