Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_4964PFAM: alpha/beta hydrolase fold; KEGG: bch:Bcen2424_3718 alpha/beta hydrolase fold. (275 aa)    
Predicted Functional Partners:
Daci_5039
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3136 AMP-dependent synthetase and ligase.
 
 
 0.490
Daci_4965
Membrane protein; KEGG: reh:H16_A1311 predicted membrane protein.
       0.480
Daci_0074
TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_0732 enoyl-CoA hydratase/isomerase.
 
 
  0.440
apaH
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.427
Daci_3296
PFAM: Ankyrin; KEGG: pap:PSPA7_2741 hypothetical protein.
 
 0.420
Daci_2483
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN3175 hypothetical protein.
  
     0.410
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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