STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4973Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid-like protein; KEGG: bbr:BB3900 ferric alcaligin siderophore receptor. (103 aa)    
Predicted Functional Partners:
Daci_3273
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: xcb:XC_0558 ferric pseudobactin M114 receptor protein.
  
     0.676
Daci_1449
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1870 outer membrane ferripyoverdine receptor.
  
     0.675
Daci_3280
PFAM: PepSY-associated TM helix domain protein; KEGG: neu:NE1084 hypothetical protein.
 
  
 0.624
Daci_4751
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor.
 
 
 0.576
Daci_1004
PFAM: putative esterase; KEGG: bur:Bcep18194_A5450 putative esterase.
  
  
 0.575
Daci_1879
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_1159 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
     0.573
Daci_1170
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xcb:XC_0557 transmembrane sensor.
 
 
 0.571
Daci_3562
PFAM: FecR protein; KEGG: pfl:PFL_2292 sigma factor regulatory protein FecR.
 
 
 0.566
Daci_2342
KEGG: bbr:BB4741 putative iron-regulated membrane protein.
 
  
 0.563
Daci_3269
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor.
 
 
 0.553
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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