STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4983PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_2247 dihydrodipicolinate synthetase; Belongs to the DapA family. (309 aa)    
Predicted Functional Partners:
Daci_0251
TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: pna:Pnap_1596 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
  
  
  0.950
Daci_4982
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_2836 mandelate racemase/muconate lactonizing enzyme.
 
   
 0.866
Daci_4981
4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: bch:Bcen2424_5806 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
  
 0.807
Daci_2511
KEGG: aav:Aave_2324 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.
 
  
 0.722
Daci_4980
PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2834 uncharacterized protein UPF0065.
 
     0.708
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.614
Daci_4979
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5073 transcriptional regulator, LysR family.
 
    0.576
Daci_4721
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: ajs:Ajs_2466 chorismate mutase.
  
  
 0.571
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
  
 0.520
Daci_4985
PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0743 acetyltransferase, GNAT family.
       0.502
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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