STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4987PFAM: Tail Collar domain protein; KEGG: fjo:Fjoh_2683 phage tail collar domain protein. (157 aa)    
Predicted Functional Partners:
Daci_4988
PFAM: Tail Collar domain protein; KEGG: sus:Acid_0150 phage tail collar domain protein.
 
    
0.790
Daci_4989
PFAM: Tail Collar domain protein; KEGG: mlo:mll4441 microcystin dependent protein MdpB.
 
    
0.789
Daci_5800
PFAM: GCN5-related N-acetyltransferase; KEGG: gur:Gura_0749 GCN5-related N-acetyltransferase.
 
     0.782
Daci_4985
PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0743 acetyltransferase, GNAT family.
 
     0.777
Daci_4990
PFAM: Ig domain protein group 1 domain protein; KEGG: sus:Acid_0554 beta-propeller repeat protein.
       0.773
Daci_3190
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: hch:HCH_06063 hypothetical protein.
 
     0.700
Daci_3189
KEGG: hch:HCH_06058 hypothetical protein.
 
     0.541
Daci_4986
Hypothetical protein.
       0.504
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
  
  
 0.490
Daci_4676
Hypothetical protein; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
  
 0.490
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.