STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4996PFAM: Fimbrial protein; KEGG: pap:PSPA7_4404 adhesin 20K. (228 aa)    
Predicted Functional Partners:
Daci_5934
PFAM: pili assembly chaperone; KEGG: bam:Bamb_4023 pili assembly chaperone.
  
 
 0.682
Daci_5937
PFAM: pili assembly chaperone; KEGG: bam:Bamb_4023 pili assembly chaperone.
  
 
 0.682
Daci_5935
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_4024 fimbrial biogenesis outer membrane usher protein.
  
 
 0.620
Daci_5938
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_4024 fimbrial biogenesis outer membrane usher protein.
  
 
 0.620
Daci_1421
PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: reu:Reut_A2932 hemolysin activator HlyB.
  
  
 0.564
Daci_4997
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_1194 exodeoxyribonuclease III Xth.
      
 0.530
Daci_4995
PFAM: Amidohydrolase 3; KEGG: pna:Pnap_4007 N-isopropylammelide isopropylaminohydrolase.
       0.527
Daci_1975
KEGG: pna:Pnap_3592 hypothetical protein.
  
 
 0.454
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.