Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4998KEGG: ajs:Ajs_1193 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Daci_2483
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN3175 hypothetical protein.
  
 
   0.736
Daci_3947
PFAM: integrase family protein; KEGG: pna:Pnap_4572 phage integrase; Belongs to the 'phage' integrase family.
  
     0.686
Daci_4774
PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_2741 17 kDa surface antigen.
  
  
 0.591
Daci_3970
KEGG: aav:Aave_2832 hypothetical protein.
  
     0.534
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
  
    0.530
ntrC
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
       0.526
Daci_3687
PFAM: Propeptide PepSY amd peptidase M4; KEGG: prw:PsycPRwf_1922 propeptide, PepSY amd peptidase M4.
  
     0.497
Daci_3969
KEGG: aav:Aave_2831 transglycosylase-associated protein.
 
    0.491
Daci_0918
KEGG: aav:Aave_4596 ribosomal subunit interface protein, putative.
  
     0.480
Daci_4410
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aav:Aave_2971 anti-sigma-factor antagonist.
   
    0.467
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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