STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_5001KEGG: ajs:Ajs_1190 conserved hypothetical signal peptide protein. (167 aa)    
Predicted Functional Partners:
Daci_5000
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1191 signal transduction histidine kinase, nitrogen specific, NtrB.
       0.791
Daci_5262
KEGG: aav:Aave_1195 putative transmembrane protein.
  
     0.754
Daci_3007
KEGG: ajs:Ajs_2549 hypothetical protein.
  
     0.750
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
  
     0.743
Daci_5428
KEGG: ajs:Ajs_0900 hypothetical protein.
  
     0.732
Daci_2432
KEGG: ajs:Ajs_2788 hypothetical protein.
  
     0.710
Daci_1574
PFAM: CheW domain protein; KEGG: ajs:Ajs_3576 putative CheW protein.
  
     0.707
Daci_2774
TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: ajs:Ajs_1083 cytochrome oxidase maturation protein, cbb3-type.
  
     0.680
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
 
     0.679
Daci_5021
KEGG: aav:Aave_1422 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
     0.678
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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