STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_5004KEGG: ajs:Ajs_1187 putative transmembrane protein. (295 aa)    
Predicted Functional Partners:
Daci_5003
PFAM: molybdopterin binding domain; KEGG: aav:Aave_1441 molybdopterin binding domain.
       0.853
Daci_5005
PFAM: fatty acid hydroxylase; KEGG: aav:Aave_1439 hypothetical protein.
 
     0.787
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.763
Daci_2423
KEGG: aav:Aave_2200 protein of unknown function DUF339.
  
     0.746
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.739
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
  
     0.737
Daci_5006
PFAM: polysaccharide deacetylase; KEGG: aav:Aave_1438 polysaccharide deacetylase.
 
    0.713
Daci_6049
PFAM: protein of unknown function DUF1239; KEGG: aav:Aave_4783 protein of unknown function DUF1239.
  
     0.706
Daci_5431
PFAM: outer membrane lipoprotein LolB; KEGG: aav:Aave_3608 putative lipoprotein.
  
     0.703
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
  
     0.696
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.