Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_5005PFAM: fatty acid hydroxylase; KEGG: aav:Aave_1439 hypothetical protein. (326 aa)    
Predicted Functional Partners:
Daci_5006
PFAM: polysaccharide deacetylase; KEGG: aav:Aave_1438 polysaccharide deacetylase.
 
     0.915
Daci_5007
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: ajs:Ajs_1184 hypothetical protein.
 
     0.901
Daci_5004
KEGG: ajs:Ajs_1187 putative transmembrane protein.
 
     0.783
Daci_5003
PFAM: molybdopterin binding domain; KEGG: aav:Aave_1441 molybdopterin binding domain.
       0.717
Daci_5696
KEGG: vei:Veis_3528 putative general secretory pathway N transmembrane protein.
  
     0.569
Daci_0111
PFAM: metallophosphoesterase; KEGG: aav:Aave_0135 metallophosphoesterase.
  
     0.491
Daci_5692
KEGG: vei:Veis_3524 hypothetical protein.
  
     0.473
Daci_5008
PFAM: phosphoribosyltransferase; KEGG: aav:Aave_1435 phosphoribosyltransferase.
 
     0.463
Daci_5691
PFAM: type II secretion system protein I/J; KEGG: vei:Veis_3523 general secretion pathway protein I.
  
     0.462
Daci_5002
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: aav:Aave_1442 glutamine synthetase, type I.
     
 0.435
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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