Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_5006PFAM: polysaccharide deacetylase; KEGG: aav:Aave_1438 polysaccharide deacetylase. (272 aa)    
Predicted Functional Partners:
Daci_5007
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: ajs:Ajs_1184 hypothetical protein.
 
   
 0.951
Daci_5005
PFAM: fatty acid hydroxylase; KEGG: aav:Aave_1439 hypothetical protein.
 
     0.915
Daci_5004
KEGG: ajs:Ajs_1187 putative transmembrane protein.
 
    0.765
Daci_5003
PFAM: molybdopterin binding domain; KEGG: aav:Aave_1441 molybdopterin binding domain.
     
 0.707
Daci_3674
PFAM: Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0177 cupin 2, conserved barrel domain protein.
  
     0.671
Daci_2296
PFAM: fatty acid hydroxylase; KEGG: bvi:Bcep1808_2232 sterol desaturase-like protein.
 
     0.552
Daci_1318
PFAM: glycosyl transferase family 2; methyltransferase small; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_4142 glycosyl transferase, family 2.
  
  
 0.522
Daci_5692
KEGG: vei:Veis_3524 hypothetical protein.
  
     0.499
Daci_5008
PFAM: phosphoribosyltransferase; KEGG: aav:Aave_1435 phosphoribosyltransferase.
       0.455
Daci_5694
PFAM: General secretion pathway L; KEGG: aav:Aave_0920 hypothetical protein.
  
     0.437
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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