STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_5007TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: ajs:Ajs_1184 hypothetical protein. (410 aa)    
Predicted Functional Partners:
Daci_5006
PFAM: polysaccharide deacetylase; KEGG: aav:Aave_1438 polysaccharide deacetylase.
 
   
 0.951
Daci_5005
PFAM: fatty acid hydroxylase; KEGG: aav:Aave_1439 hypothetical protein.
 
     0.901
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
  
    0.786
Daci_5004
KEGG: ajs:Ajs_1187 putative transmembrane protein.
 
     0.700
Daci_5003
PFAM: molybdopterin binding domain; KEGG: aav:Aave_1441 molybdopterin binding domain.
  
    0.662
Daci_1565
PFAM: cytochrome c class I; KEGG: ajs:Ajs_3583 cytochrome c, class I.
  
  
 0.650
Daci_2749
PFAM: cytochrome c class I; KEGG: aav:Aave_1504 cytochrome c, class I.
  
  
 0.650
Daci_2499
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: rme:Rmet_2155 cytochrome c, class I.
 
 
 0.575
Daci_3773
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_4255 TonB family protein.
 
    0.553
Daci_1004
PFAM: putative esterase; KEGG: bur:Bcep18194_A5450 putative esterase.
  
    0.532
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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