STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_5052PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psa:PST_1001 putative outer membrane receptor. (726 aa)    
Predicted Functional Partners:
Daci_3112
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2217 putative TonB-dependent receptor.
 
  
 0.657
Daci_5055
KEGG: xcb:XC_1336 hypothetical protein.
 
     0.582
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
  
  
 0.570
Daci_5053
Flavodoxin/nitric oxide synthase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: har:HEAR3398 oxidoreductase binding flavins likely to be involved in sulfur metabolism (CysJ: sulfite reductase alpha subunit).
 
   
 0.563
Daci_5056
KEGG: mpt:Mpe_A3729 hypothetical protein.
 
   
 0.563
Daci_1879
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_1159 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
  
 0.554
Daci_5057
PFAM: PepSY-associated TM helix domain protein; KEGG: mpt:Mpe_A3730 hypothetical protein.
 
   
 0.546
Daci_3273
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: xcb:XC_0558 ferric pseudobactin M114 receptor protein.
  
  
 0.537
Daci_3531
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbr:BB3900 ferric alcaligin siderophore receptor.
  
  
 0.530
Daci_3276
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: azo:azo2994 probable TonB-dependent receptor.
  
  
 0.526
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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