STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_0069PFAM: Auxin Efflux Carrier; COG0679 Predicted permeases, good Ref ZP hit to auxin efflux carrier family protein fromSulfitobacter sp. EE-36, swissprot hit to Uncharacterized transporter MTH_1382 from Methanothermobacter thermautotrophicus str. Delta H. (293 aa)    
Predicted Functional Partners:
Dshi_0068
Lipoprotein; KEGG: sil:SPO3414 lipoprotein, putative; Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do goose-type lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
       0.674
yccV
TIGRFAM: hemimethylated DNA binding protein PFAM: Hemimethylated DNA-binding region KEGG: sil:SPO3412 hypothetical protein, no swissprot.
       0.664
Dshi_0826
Malic protein NAD-binding; Malate decarboxylase, NAD(P) dependent(two forms of the enzyme with different kinetics), Reaction: (S)-malate + NAD+ = pyruvate + CO2 + NADH.
  
  
 0.640
maeB
NADP-dependent malic enzyme; PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding KEGG: sit:TM1040_2877 malate dehydrogenase (oxaloacetate decarboxylating) (NADP+)., phosphate acetyltransferase; NADP-ME.
  
  
 0.639
Dshi_3238
KEGG: jan:Jann_0110 hypothetical protein.
 
    0.401
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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