STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_0110PFAM: protein of unknown function DUF188 KEGG: rde:RD1_0321 YaiI/YqxD family protein, putative; Belongs to the UPF0178 family. (150 aa)    
Predicted Functional Partners:
Dshi_0109
PFAM: Auxin Efflux Carrier KEGG: jan:Jann_0051 auxin efflux carrier, best swissprot hit to Putative malonate transporter from Sinorhizobium meliloti (Rhizobium meliloti) and best ref YP hit to Auxin Efflux Carrier from Jannaschia sp. CCS1; COG0679 Predicted permeases.
       0.846
Dshi_0108
KEGG: syw:SYNW1655 hypothetical protein, best ref ZP hit to Methyltransferase type 11 from Methylobacterium sp. 4-46, no IPR scan results.
       0.500
Dshi_0474
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
       0.418
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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