STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_0177KEGG: jan:Jann_0367 hypothetical protein, no significant swissprot, no IPR Scan results. (117 aa)    
Predicted Functional Partners:
Dshi_2054
COG: COG0123 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein; PFAM: PF00850; PRINTS PR01270.
   
    0.682
cobM
TIGRFAM: precorrin-4 C11-methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase KEGG: mag:amb0514 precorrin-4 methylase, anaerobic equivalent cbiF.
  
    0.678
ubiG2
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
    0.670
cbiG
TIGRFAM: precorrin-3B C17-methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein KEGG: mag:amb0298 precorrin-3B methylase.
  
    0.554
Dshi_2980
Hypothetical protein; PFAM: PF00300; related to phosphoglycerate mutase.
  
    0.549
cobI
TIGRFAM: precorrin-2 C20-methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase KEGG: mag:amb0297 precorrin-2 methylase; alternative gene name: cbiL; Belongs to the precorrin methyltransferase family.
  
    0.518
Dshi_1717
Conserved hypothetical protein; COG: COG1399 - Predicted metal-binding, possibly nucleic acid-binding protein; PFAM: PF02620.
  
     0.515
cobL
Decarboxylating precorrin-6Y C(5,15)-methyltransferase; KEGG: ava:Ava_3558 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
    0.511
pcd
PFAM: transcriptional coactivator/pterin dehydratase KEGG: rde:RD1_0944 pterin-4-alpha-carbinolamine dehydratase.
   
    0.485
Dshi_1347
Conserved hypothetical protein.
   
    0.485
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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