STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bztCTIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_1446 amino acid ABC transporter, permease protein, high swissprot to Glutamate/glutamine/aspartate/asparagine transport system permease from Rhodobacter capsulatus. (432 aa)    
Predicted Functional Partners:
bztB
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_1445 glutamate/glutamine/aspartate/asparagine transport system permease protein, high swissprot.
 
0.999
bztD
PFAM: ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_0630 ABC transporter related, high swissprot hit to Glutamate/glutamine/aspartate/asparagine transport ATP-binding from Rhodobacter capsulatus.
 0.999
bztA
TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein SMART: extracellular solute-binding protein family 3 KEGG: sil:SPO0519 glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein; high swissprot hit to Glutamate/glutamine/aspartate/asparagine-binding protein bztA from Rhodobacter capsulatus; RBS site AGGAT.
 
 0.997
Dshi_2222
PFAM: extracellular solute-binding protein family 3 COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain SMART: ionotropic glutamate receptor KEGG: rde:RD1_1898 periplasmic binding protein, putative; family 3.
 
 0.868
Dshi_2221
Putative amino acid ABC transporter; COG4598: ABC-type histidine transport system, ATPase component PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1899 amino acid ABC transporter, ATP-binding protein; ATPase subunit.
 
  
 0.771
Dshi_2224
Putative polar amino acid ABC transporter; Swiss-Prot entry: P0A2I7 Histidine transport system permease protein hisM TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: sit:TM1040_1714 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; inner membrane subunit.
 
 
0.741
Dshi_2223
Swiss-Prot entry: P52094 Histidine transport system permease protein hisQ COG4215: ABC-type arginine transport system, permease component KEGG: sit:TM1040_1713 binding-protein-dependent transport systems inner membrane component.
 
    0.639
Dshi_1438
Substrate-binding region of ABC-type glycine betaine transport system; ABC transporter gene cluster, periplasmatic substrate binding component.
  
 
 0.490
putA
Bifunctional protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
  
 0.490
Dshi_1701
SWISSPROT P39832: High-affinity zinc uptake system membrane protein znuB; PFAM: PF00950; COG: COG1108 - ABC-type Mn2+/Zn2+ transport systems, permease components; ABC-3 family; znuB.
  
 
 0.484
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.