STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_0589Conserved hypothetical protein; Unsure GC frame plot, no significant swissprot; no conserved domains detected; high Ref ZP hit to hypothetical protein R2601_11544 [Roseovarius sp. HTCC2601]. (261 aa)    
Predicted Functional Partners:
Dshi_0588
uracil-DNA glycosylase superfamily; Unsure GC frame plot; InterPro Scan results: SSF52141 UDNA_glycsylseSF; NCBI conserved domains: COG1573, Uracil-DNA glycosylase and pfam03167, UDG, Uracil DNA glycosylase superfamily; middle swissprot hit to Uncharacterized protein HI0220.2. from Haemophilus influenzae; high Ref YP hit to Uracil-DNA glycosylase superfamily [Jannaschia sp. CCS1].
       0.846
Dshi_1562
Conserved hypothetical protein.
  
    0.772
Dshi_2095
Conserved hypothetical protein.
  
    0.769
Dshi_2835
Conserved hypothetical protein; PFAM: Rhomboid family protein KEGG: sit:TM1040_0444 rhomboid-like protein COG0705: Uncharacterized membrane protein (homolog of Drosophila rhomboid); related to rhomboid family protein.
  
    0.769
Dshi_3102
KEGG: rsh:Rsph17029_2670 hypothetical protein.
  
     0.765
Dshi_3077
KEGG: sil:SPO0311 hypothetical protein.
  
    0.761
Dshi_0832
Conserved hypothetical protein; Conserved in Rhodobacteraceae.
  
    0.758
Dshi_1183
Conserved hypothetical protein; Conserved in Rhodobacteraceae.
  
     0.744
Dshi_2850
SMART 00382: AAA - ATPases associated with a variety of cellular activities; AAA family.
  
     0.744
Dshi_3088
KEGG: rsh:Rsph17029_2395 hypothetical protein.
  
    0.729
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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