STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_0639PFAM: ABC-2 type transporter, NCBI conserved domains: COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component; good swissprot hit to Inner membrane transport permease yadH from Escherichia coli K12; high Ref ZP hit to ABC transporter, permease protein [Roseobacter sp. SK209-2-6]; permease protein. (253 aa)    
Predicted Functional Partners:
Dshi_0638
PFAM: ABC transporter related SMART: AAA ATPase; NCBI conserved domains: cd03265, ABC_DrrA; good swissprot hit to Uncharacterized ABC transporter ATP-binding protein yadG from Escherichia coli K12; high gb hit to ABC transporter, ATP-binding protein, putative [Oceanibulbus indolifex HEL-45]; ATP-binding protein.
  
 0.972
Dshi_2913
SWISSPROT P36879: Uncharacterized ABC transporter ATP-binding protein yadG; PFAM: PF00005; PROSITE: PS00211, PS50893.
  
 0.844
Dshi_0640
PFAM: peptidase S49; NCBI conserved domains: COG0616, SppA; middle swissprot hit to Putative signal peptide peptidase sppA from Bacillus halodurans; high Ref ZP hit to peptidase S49 [Rhodobacterales bacterium HTCC2150].
  
    0.572
Dshi_2627
Swiss-Prot: P0ACY1-Protein ydjA PFAM: nitroreductase KEGG: rsq:Rsph17025_0371 nitroreductase; related to nitroreductase.
  
  
 0.563
bluB
cob(II)yrinic acid a,c-diamide reductase; KEGG: sil:SPO3254 cobalamin biosynthesis protein BluB TIGRFAM: cob(II)yrinic acid a,c-diamide reductase PFAM: nitroreductase; good swissprot hit toPutative cob(II)yrinic acid a,c-diamide reductase from Rhodobacter capsulatus.
  
  
 0.561
Dshi_0643
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NCBI conserved domains: PRK09134, short chain dehydrogenase; middle swissprot hit to 3-oxoacyl-[acyl-carrier-protein] reductase from Staphylococcus epidermidis ATCC 12228; high Ref ZP hit to short chain dehydrogenase [Roseobacter sp. AzwK-3b].
  
    0.559
Dshi_0641
Hypothetical protein; No swissprot, no conserved domains, bad Ref ZP hit to hypothetical protein ISM_10031 [Roseovarius nubinhibens ISM].
  
    0.543
Dshi_0642
TIGRFAM: Na+/Ca+ antiporter, CaCA family PFAM: sodium/calcium exchanger membrane region, NCBI conserved domains: COG0530, ECM27, Ca2+/Na+ antiporter; bad swissprot hit to Sodium/potassium/calcium exchanger 1 from Homo sapiens; high Ref ZP hit to K+-dependent Na+/Ca+ exchanger related-protein [Roseobacter sp. AzwK-3b]; CaCA family.
  
    0.538
Dshi_0637
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; NCBI conserved domains: see PFAM result before; middle swissprot hit to Chlorohydroquinone/hydroquinone 1,2-dioxygenase from Sphingomonas paucimobilis; high Ref YP hit to glyoxylase family protein [Roseobacter denitrificans OCh 114].
  
    0.504
Dshi_2050
TIGRFAM: TIGR00056 conserved hypothetical integral membrane protein; COG: COG0767 - ABC-type transport system involved in resistance to organic solvents, permease component; PROSITE: PS50801; PFAM: PF02405; SUPERFAMILY: SSF52091.
    
  0.504
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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