STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixHPFAM: FixH family protein; NCBI conserved domains: fixH; low swissprot hit to Nitrogen fixation protein fixH from Sinorhizobium meliloti, middle Ref ZP hit to FixH [Silicibacter sp. TM1040]. (155 aa)    
Predicted Functional Partners:
fixP
Cytochrome c oxidase; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.995
fixG
Nitrogen fixation protein fixG; TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; PFAM00037 4Fe-4S binding domain; high swissprot hit to Nitrogen fixation protein fixG from Sinorhizobium meliloti; high Ref ZP hit to iron-sulfur-binding protein, RdxA/RdxB/FixG family [Roseobacter sp. AzwK-3b].
 
  
 0.994
fixN
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I PFAM: cytochrome c oxidase subunit I; NCBI conserved domains: cd01661, cbb3_Oxidase_I; high swissprot hit to Cytochrome c oxidase subunit 1 homolog, bacteroid from Sinorhizobium meliloti; high Ref ZP hit to cytochrome c oxidase, cbb3-type, subunit I [Roseovarius sp. TM1035]; cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.992
fixO
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II PFAM: cytochrome C oxidase mono-heme subunit/FixO; NCBI conserved domains: fixO; no significant swissprot, high Ref ZP hit to cytochrome c oxidase, cbb3-type, subunit II [Roseovarius sp. TM1035]; cbb3-type, subunit II.
 
 
 0.992
fixS
Nitrogen fixation protein fixS; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type PFAM: cytochrome oxidase maturation protein cbb3-type; NCBI conserved domains: fixS, ccoS; low swissprot hit to Nitrogen fixation protein fixS from Sinorhizobium meliloti; low Ref YP hit to cytochrome oxidase maturation protein, cbb3-type [Rhodobacter sphaeroides ATCC 17025].
 
  
 0.982
fixQ
PFAM: Cbb3-type cytochrome oxidase component; NCBI conserved domains: fixQ; no significant swissprot hit; low Ref ZP hit to cytochrome c oxidase, cbb3-type, subunit IV [Loktanella vestfoldensis SKA53]; cbb3-type, subunit IV.
 
  
 0.974
fixI
Nitrogen fixation protein fixI; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; high swissprot hit to Nitrogen fixation protein fixI from Sinorhizobium meliloti; high Ref ZP hit to copper-t; E1-E2 type cation ATPase fixI.
 
  
 0.966
hemN2
TIGRFAM: oxygen-independent coproporphyrinogen III oxidase PFAM: Radical SAM domain protein; HemN domain protein (same as NCBI conserved domains); high swissprot hit to Oxygen-independent coproporphyrinogen III oxidase from Paracoccus denitrificans PD1222; high Ref ZP hit to coproporphyrinogen III oxidase [Roseovarius sp. TM1035]; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.827
petC
PFAM: cytochrome c1 KEGG: rde:RD1_0565 cytochrome c1.
   
 
 0.811
cycM
PFAM: cytochrome c class I; NCBI conserved domains: pfam00034, Cytochrom_C; middle swissprot hit to Cytochrome c-552 from Paracoccus denitrificans; middle Ref ZP hit to cytochrome c552 [Roseobacter sp. AzwK-3b].
   
   0.809
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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