STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_0701Methyltransferase domain protein; PFAM: Methyltransferase type 11; Methyltransferase type 12; NCBI conserved domains: COG2226, UbiE; no significant swissprot; middle Ref YP hit to Methyltransferase type 12 [Flavobacterium johnsoniae UW101]. (217 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.949
Dshi_0702
WbqC-like family protein; InterPro Scan and NCBI conserved domains: pfam08889, WbqC; no significant swissprot; low gb hit to WbnG [Shigella dysenteriae].
 
   0.902
Dshi_0703
Hypothetical protein; NCBI conserved domains: pfam00535, Glycos_transf_2, Glycosyl transferase family 2; no significant swissprot; low Ref YP hit to hypothetical protein Rsph17025_3846 [Rhodobacter sphaeroides ATCC 17025].
  
    0.775
Dshi_0444
Conserved hypothetical protein; No significant swissprot, no conserved domains, low Ref YP hit to hypothetical protein Nham_4077 from Nitrobacter hamburgensis X14.
    
 0.608
Dshi_0445
Conserved hypothetical protein; No significant swissprot, no conserved domains, low Ref ZP hit to hypothetical protein NB311A_09431 from Nitrobacter sp. Nb-311A.
    
 0.608
plsX
Fatty acid/phospholipid synthesis protein; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
   
    0.542
Dshi_0704
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class-III; NCBI conserved domains: pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family; COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme; low swissprot hit to UDP-Ara4O aminotransferase from Salmonella typhi; middle Ref YP hit to DegT/DnrJ/EryC1/StrS aminotransferase [Methylobacillus flagellatus KT]; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.531
Dshi_0705
Hypothetical protein; NCBI conserved domains: COG4421, Capsular polysaccharide biosynthesis protein; no significant swissprot; low Ref ZP hit to Capsular polysaccharide biosynthesis protein-like protein from Roseobacter sp. AzwK-3b.
       0.448
atpH
ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
  
   0.416
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.