STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1020Conserved hypothetical protein. (298 aa)    
Predicted Functional Partners:
Dshi_2514
KEGG: sil:SPO1769 hypothetical protein.
  
    0.779
Dshi_0127
KEGG: sit:TM1040_2680 hypothetical protein; no swissprot, no IPR Scan results.
  
    0.776
Dshi_0677
Conserved hypothetical protein; Pfam03567 Sulfotransferase; NCBI conserved domains: pfam03567; bad swissprot hit to Carbohydrate sulfotransferase 9 from Mus musculus; high Ref ZP hit to hypothetical protein R2601_13619 [Roseovarius sp. HTCC2601].
  
    0.776
Dshi_0678
PFAM: glycosyl transferase family 14; NCBI conserved domains: pfam02485, Branch, Core-2/I-Branching enzyme, pfam03267, DUF266, Domain of unknown function, bad swissprot hit to Xylosyltransferase from Ciona intestinalis; high Ref YP hit to epsK domain protein [Silicibacter pomeroyi DSS-3].
  
    0.776
Dshi_0652
Conserved hypothetical protein; No significant swissprot; no conserved domains; low Ref ZP hit to hypothetical protein NAS141_10191 [Sulfitobacter sp. NAS-14.1].
  
     0.771
Dshi_0761
Conserved hypothetical protein; Conserved in Rhodobacteraceae.
  
     0.771
Dshi_3580
KEGG: sil:SPO0035 core-2/I-branching enzyme family protein.
  
    0.770
Dshi_3581
KEGG: jan:Jann_0222 hypothetical protein.
  
    0.769
Dshi_2932
Conserved hypothetical protein; Associated with ATP synthase gene cluster.
  
     0.768
Dshi_0126
KEGG: sit:TM1040_2681 hypothetical protein, bad BLAST hits, no IPR Scan results.
  
    0.763
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.