STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1036Tripartite ATP-independent periplasmic transporter DctQ component; TRAP gene cluster - dctPQM. (181 aa)    
Predicted Functional Partners:
Dshi_1037
TRAP dicarboxylate transporter; TRAP gene cluster - dctPQM; DctM subunit.
   0.943
Dshi_1035
TRAP dicarboxylate transporter- DctP subunit; TRAP gene cluster - dctPQM.
 
    0.929
dctP5
PFAM: TRAP dicarboxylate transporter- DctP subunit; NCBI conserved domains: COG1638, DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component; no significant swissprot; good Ref ZP hit to TRAP dicarboxylate transporter- DctP subunit [Shewanella woodyi ATCC 51908].
 
    0.769
Dshi_0606
Conserved hypothetical protein; Unsure GC frame plot, no significant swissprot, no conserved domains; low Ref ZP hit to TRAP transporter, transmembrane protein, putative [Roseovarius sp. HTCC2601].
  
     0.651
Dshi_3153
PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: sil:SPO1112 TRAP transporter, periplasmic protein.
 
    0.585
Dshi_3155
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: sil:SPO1114 TRAP dicarboxylate transporter, DctM subunit,TMH.
   0.436
Dshi_1043
TRAP dicarboxylate transporter- DctP subunit; TRAP gene cluster - dctPQM.
 
    0.427
dctM5
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; middle swissprot hit to Sialic acid TRAP transporter permease protein siaT from Haemophilus influenzae 86-028NP; high Ref ZP hit to TRAP dicarboxylate transporter, DctM subunit [Shewanella woodyi ATCC 51908]; DctM subunit.
   0.409
Dshi_1480
TRAP dicarboxylate transporter- DctP subunit; TRAP gene cluster - dctPQM.
 
    0.402
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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