STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1165Pyrrolo-quinoline quinone; Contains PQQ repeat domain involved in PQQ binding. (450 aa)    
Predicted Functional Partners:
yaeT
Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.935
Dshi_1187
Contains SurA domain and Peptidyl-prolyl cis-trans isomerase domain, periplasmatic.
  
 
 0.910
bamD
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.906
Dshi_1716
COG: COG2913 - Small protein A (tmRNA-binding).
  
 
 0.853
Dshi_1164
Conserved hypothetical protein; Conserved in Rhodobacteraceae and Rhizobiales.
  
    0.848
engA
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.826
Dshi_0247
Conserved hypothetical protein; TIGRFAM: rpsU-divergently transcribed protein PFAM: COQ9 domain protein KEGG: rde:RD1_1038 hypothetical protein, best Ref hits to hypothetical proteins, middel swissprot hit to Ubiquinone biosynthesis protein COQ9 from Drosophila melanogaster (fruit fly), gene arrangement with following gene (Dshi_0248 quinone oxidoreductase)?.
  
     0.649
Dshi_0044
KEGG: rsq:Rsph17025_3134 hypothetical protein.
  
    0.633
ostA
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.573
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.565
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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