STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1194TRAP gene cluster - dctPQM; 4TM/12TM fusion protein. (743 aa)    
Predicted Functional Partners:
Dshi_1195
TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
 
 
  0.990
Dshi_1443
TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
    0.819
Dshi_2288
TIGRFAM: TRAP transporter solute receptor, TAXI family KEGG: rde:RD1_3647 TRAP-type transporter, periplasmic component, putative; TAXI family.
 
    0.800
Dshi_0993
TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
 
    0.796
Dshi_0645
TRAP-type uncharacterized transport system; TIGRFAM: TRAP transporter solute receptor, TAXI family; NCBI conserved domains: COG2358, Imp, TRAP-type uncharacterized transport system, periplasmic component; no significant swissprot; high Ref YP hit to TRAP-type uncharacterized transport system, periplasmic component from Hahella chejuensis KCTC 2396; periplasmic component.
    0.786
Dshi_1193
Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenase.
  
    0.779
Dshi_1087
TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
 
    0.669
Dshi_1924
TIGRFAM: TIGR02122 TRAP transporter solute receptor, TAXI family; COG: COG2358 - TRAP-type uncharacterized transport system, periplasmic component; Gene3D: G3DSA:3.40.190.10; SUPERFAMIYLY: SSF53850.
 
    0.544
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.