STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1225Deoxyribodipyrimidine photo-lyase; Photolyase/Cryptochrome family protein, catalytic activity not proved. (514 aa)    
Predicted Functional Partners:
Dshi_1226
Hypothetical protein.
 
    0.845
Dshi_1224
Hypothetical protein.
  
    0.828
Dshi_1389
Putative deoxyribodipyrimidine photo-lyase.
  
    0.751
Dshi_0599
PFAM: deoxyribodipyrimidine photolyase-related protein; NCBI conserved domains: pfam04244, DPRP, Deoxyribodipyrimidine photolyase-related protein and COG0415, PhrB, Deoxyribodipyrimidine photolyase; no significant swissprot; high Ref YP hit to deoxyribodipyrimidine photolyase-related protein [Jannaschia sp. CCS1].
 
  
 0.727
Dshi_0934
Transposase IS3/IS911 family protein.
   
    0.536
cfa
Swiss-Prot: P0A9H7-Cyclopropane-fatty-acyl-phospholipid synthase PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12.
 
  
 0.517
pepN
Involved in the degradation of intracellular peptides generated by protein breakdown during normal growth or in response to nutrient starvation, Release of an N-terminal amino acid, Xaa-|-Yaa- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action).
     
 0.501
tspO
Tryptophan rich sensory protein; PFAM: TspO/MBR family protein KEGG: jan:Jann_0035 TspO and MBR like proteins PMID: 17098896; 10648776.
 
  
 0.492
Dshi_0997
Conserved hypothetical protein; Putative inner membrane protein; Belongs to the UPF0753 family.
  
     0.471
Dshi_0622
PFAM02469 Fasciclin domain; NCBI conserved domains: COG2335, Secreted and surface protein containing fasciclin-like repeats; middle swissprot hit to Uncharacterized protein sll1483 precursor from Synechocystis sp. PCC 6803; good Ref ZP hit to beta-Ig-H3/fasciclin [Roseovarius sp. TM1035].
 
  
 0.467
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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