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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmsB4Fe-4S ferredoxin iron-sulfur binding domain protein; Dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC), 4Fe-4S ferredoxin iron-sulfur binding domain protein. (248 aa)    
Predicted Functional Partners:
dmsA2
Molybdopterin oxidoreductase Fe4S4 region; Dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC), molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.999
dmsC
DMSO reductase anchor subunit; Dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).
 
 
 0.996
cysC
Putative bifunctional SAT/APS kinase: sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
     
 0.911
sseA
3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein KEGG: rsh:Rsph17029_2544 3-mercaptopyruvate sulfurtransferase; both, high swissprot and Ref YP hits to 3-mercaptopyruvate sulfurtransferase (sseA).
     
 0.907
cysI
Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; Catalyseses the six-electron reduction of sulphite to sulphide.
    
 0.906
cysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
     
 0.903
ssuD
Swiss-Prot: P80645-Alkanesulfonate monooxygenase PFAM: luciferase family protein.
     
 0.900
dmsA1
Swiss-Prot: Q57366 - Dimethyl sulfoxide reductase [Precursor] PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region KEGG: rde:RD1_3664 dimethyl sulfoxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.898
fdnI
TIGRFAM: formate dehydrogenase, gamma subunit; middle swissprot hit to Formate dehydrogenase, nitrate-inducible, cytochrome b556(fdn) subunit (Formate dehydrogenase-N subunit gamma) from Escherichia coli K12; high Ref ZP hit to putative formate dehydrogenase [Loktanella vestfoldensis SKA53]; NCBI conserved domains: fdnI.
 
 
 0.891
napA
Periplasmic nitrate reductase NapA; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 
 0.888
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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