STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
citFRepresents a citrate:acetyl-ACP transferase, alpha subunit of the holoenzyme citrate lyase composed of alpha, beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6TCA-cycle. (515 aa)    
Predicted Functional Partners:
citE2
Citrate lyase subunit beta; PFAM: HpcH/HpaI aldolase KEGG: rsq:Rsph17025_2481 citrate (pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.967
Dshi_1045
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.939
Dshi_2874
PIR: PIRSF015582 - citrate lyase, beta subunit; PFAM: PF03328; COG: COG2301 - Citrate lyase beta subunit; Gene3D: G3DSA:3.20.20.60; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.939
citE1
Swiss-Prot: P0A9I1-Citrate lyase subunit beta PIRSF015582: citrate lyase, beta subunit [Validated]; subunit beta; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.937
Dshi_1426
Hydro-lyase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.863
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
   
    0.781
Dshi_2446
PFAM: dihydrodipicolinate synthetase Swiss-Prot: O69782-Dihydrodipicolinate synthase KEGG: sil:SPOA0244 dihydrodipicolinate synthase family protein; Belongs to the DapA family.
   
    0.781
Dshi_1425
This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor (PFAM, INTERPRO; COG: NAD-dependent enzyme).
  
    0.581
rbsA3
ABC transporter (importer) gene cluster: fused ATP binding cassette (ABC) domains; part of a heterotrimer.
       0.540
rbsB2
Inner-membrane translocator; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotrimer; Belongs to the binding-protein-dependent transport system permease family.
       0.540
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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