STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1443TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family. (322 aa)    
Predicted Functional Partners:
Dshi_1444
TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
 
  0.996
Dshi_0994
TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
    0.831
Dshi_2287
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: rde:RD1_3648 hypothetical protein; 4TM/12TM fusion protein.
    0.823
Dshi_1194
TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
    0.819
Dshi_1088
TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
    0.812
uspG
Contains 1 UspA domain, expression is enhanced when the cell is exposed to stress agents, enhances the rate of cell survival during prolonged exposure to such conditions.
 
    0.811
Dshi_0646
TRAP-type uncharacterized transport system, fused permease components; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; NCBI conserved domains: COG4666, TRAP-type uncharacterized transport system, fused permease componen; bad swissprot hit to Sialic acid TRAP transporter permease protein siaT from Haemophilus influenzae; high Ref ZP hit to TRAP-type uncharacterized transport system, fused permease components [Roseobacter sp. CCS2].
    0.798
Dshi_1446
Aminotransferase class-III; PLP-dependent enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.751
Dshi_0626
Basic organic compound ABC-transporter; PFAM: binding-protein-dependent transport systems inner membrane component; NCBI conserved domains: COG4662, TupA, ABC-type tungstate transport system, periplasmic component; low swissprot hit to Sulfate transport system permease protein cysW from Escherichia coli K12; high Ref ZP hit to sulfate/tungstate uptake family ABC transporter, permease protein from Roseovarius sp. 217; permease protein.
   
  
 0.634
Dshi_3153
PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: sil:SPO1112 TRAP transporter, periplasmic protein.
      
 0.632
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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