STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspGContains 1 UspA domain, expression is enhanced when the cell is exposed to stress agents, enhances the rate of cell survival during prolonged exposure to such conditions. (144 aa)    
Predicted Functional Partners:
Dshi_1444
TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
 
    0.921
Dshi_1446
Aminotransferase class-III; PLP-dependent enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.902
Dshi_1443
TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
 
    0.811
Dshi_2686
Swiss-Prot: P37903-Universal stress protein F PFAM: UspA domain protein KEGG: sit:TM1040_2126 UspA.
  
     0.717
Dshi_1335
Conserved hypothetical protein.
   
    0.485
Dshi_1442
Peroxidase.
  
    0.418
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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